This page was generated from examples/anchor_tabular_adult.ipynb.

Anchor explanations for income prediction

In this example, we will explain predictions of a Random Forest classifier whether a person will make more or less than $50k based on characteristics like age, marital status, gender or occupation. The features are a mixture of ordinal and categorical data and will be pre-processed accordingly.

import numpy as np
from sklearn.ensemble import RandomForestClassifier
from sklearn.compose import ColumnTransformer
from sklearn.pipeline import Pipeline
from sklearn.impute import SimpleImputer
from sklearn.metrics import accuracy_score
from sklearn.preprocessing import StandardScaler, OneHotEncoder
from alibi.explainers import AnchorTabular
from alibi.datasets import fetch_adult

Load adult dataset

The fetch_adult function returns a Bunch object containing the features, the targets, the feature names and a mapping of categorical variables to numbers which are required for formatting the output of the Anchor explainer.

adult = fetch_adult()
adult.keys()

dict_keys(['data', 'target', 'feature_names', 'target_names', 'category_map'])

data = adult.data
target = adult.target
feature_names = adult.feature_names
category_map = adult.category_map

Note that for your own datasets you can use our utility function gen_category_map to create the category map:

from alibi.utils.data import gen_category_map

Define shuffled training and test set

np.random.seed(0)
data_perm = np.random.permutation(np.c_[data, target])
data = data_perm[:,:-1]
target = data_perm[:,-1]

idx = 30000
X_train,Y_train = data[:idx,:], target[:idx]
X_test, Y_test = data[idx+1:,:], target[idx+1:]

Create feature transformation pipeline

Create feature pre-processor. Needs to have ‘fit’ and ‘transform’ methods. Different types of pre-processing can be applied to all or part of the features. In the example below we will standardize ordinal features and apply one-hot-encoding to categorical features.

Ordinal features:

ordinal_features = [x for x in range(len(feature_names)) if x not in list(category_map.keys())]
ordinal_transformer = Pipeline(steps=[('imputer', SimpleImputer(strategy='median')),
                                      ('scaler', StandardScaler())])

Categorical features:

categorical_features = list(category_map.keys())
categorical_transformer = Pipeline(steps=[('imputer', SimpleImputer(strategy='median')),
                                          ('onehot', OneHotEncoder(handle_unknown='ignore'))])

Combine and fit:

preprocessor = ColumnTransformer(transformers=[('num', ordinal_transformer, ordinal_features),
                                               ('cat', categorical_transformer, categorical_features)])
preprocessor.fit(data)

ColumnTransformer(n_jobs=None, remainder='drop', sparse_threshold=0.3,
                  transformer_weights=None,
                  transformers=[('num',
                                 Pipeline(memory=None,
                                          steps=[('imputer',
                                                  SimpleImputer(add_indicator=False,
                                                                copy=True,
                                                                fill_value=None,
                                                                missing_values=nan,
                                                                strategy='median',
                                                                verbose=0)),
                                                 ('scaler',
                                                  StandardScaler(copy=True,
                                                                 with_mean=True,
                                                                 with_std=True))],
                                          verbose=False),
                                 [0, 8, 9...
                                 Pipeline(memory=None,
                                          steps=[('imputer',
                                                  SimpleImputer(add_indicator=False,
                                                                copy=True,
                                                                fill_value=None,
                                                                missing_values=nan,
                                                                strategy='median',
                                                                verbose=0)),
                                                 ('onehot',
                                                  OneHotEncoder(categorical_features=None,
                                                                categories=None,
                                                                drop=None,
                                                                dtype=<class 'numpy.float64'>,
                                                                handle_unknown='ignore',
                                                                n_values=None,
                                                                sparse=True))],
                                          verbose=False),
                                 [1, 2, 3, 4, 5, 6, 7, 11])],
                  verbose=False)

Train Random Forest model

Fit on pre-processed (imputing, OHE, standardizing) data.

np.random.seed(0)
clf = RandomForestClassifier(n_estimators=50)
clf.fit(preprocessor.transform(X_train), Y_train)

RandomForestClassifier(bootstrap=True, class_weight=None, criterion='gini',
                       max_depth=None, max_features='auto', max_leaf_nodes=None,
                       min_impurity_decrease=0.0, min_impurity_split=None,
                       min_samples_leaf=1, min_samples_split=2,
                       min_weight_fraction_leaf=0.0, n_estimators=50,
                       n_jobs=None, oob_score=False, random_state=None,
                       verbose=0, warm_start=False)

Define predict function

predict_fn = lambda x: clf.predict(preprocessor.transform(x))
print('Train accuracy: ', accuracy_score(Y_train, predict_fn(X_train)))
print('Test accuracy: ', accuracy_score(Y_test, predict_fn(X_test)))

Train accuracy:  0.9655333333333334
Test accuracy:  0.85390625

Initialize and fit anchor explainer for tabular data

explainer = AnchorTabular(predict_fn, feature_names, categorical_names=category_map)

Discretize the ordinal features into quartiles

explainer.fit(X_train, disc_perc=[25, 50, 75])

Getting an anchor

Below, we get an anchor for the prediction of the first observation in the test set. An anchor is a sufficient condition - that is, when the anchor holds, the prediction should be the same as the prediction for this instance.

idx = 0
class_names = adult.target_names
print('Prediction: ', class_names[explainer.predict_fn(X_test[idx].reshape(1, -1))[0]])

Prediction:  <=50K

We set the precision threshold to 0.95. This means that predictions on observations where the anchor holds will be the same as the prediction on the explained instance at least 95% of the time.

explanation = explainer.explain(X_test[idx], threshold=0.95)
print('Anchor: %s' % (' AND '.join(explanation['names'])))
print('Precision: %.2f' % explanation['precision'])
print('Coverage: %.2f' % explanation['coverage'])

Anchor: Marital Status = Separated AND Sex = Female
Precision: 0.96
Coverage: 0.11